Distributed Cholesky QR


Mahout has a distributed implementation of QR decomposition for tall thin matricies1.


For the classic QR decomposition of the form \(\mathbf{A}=\mathbf{QR},\mathbf{A}\in\mathbb{R}^{m\times n}\) a distributed version is fairly easily achieved if \(\mathbf{A}\) is tall and thin such that \(\mathbf{A}^{\top}\mathbf{A}\) fits in memory, i.e. m is large but n < ~5000 Under such circumstances, only \(\mathbf{A}\) and \(\mathbf{Q}\) are distributed matricies and \(\mathbf{A^{\top}A}\) and \(\mathbf{R}\) are in-core products. We just compute the in-core version of the Cholesky decomposition in the form of \(\mathbf{LL}^{\top}= \mathbf{A}^{\top}\mathbf{A}\). After that we take \(\mathbf{R}= \mathbf{L}^{\top}\) and \(\mathbf{Q}=\mathbf{A}\left(\mathbf{L}^{\top}\right)^{-1}\). The latter is easily achieved by multiplying each verticle block of \(\mathbf{A}\) by \(\left(\mathbf{L}^{\top}\right)^{-1}\). (There is no actual matrix inversion happening).


Mahout dqrThin(...) is implemented in the mahout math-scala algebraic optimizer which translates Mahout’s R-like linear algebra operators into a physical plan for both Spark and H2O distributed engines.

def dqrThin[K: ClassTag](A: DrmLike[K], checkRankDeficiency: Boolean = true): (DrmLike[K], Matrix) = {        
    if (drmA.ncol > 5000)
        log.warn("A is too fat. A'A must fit in memory and easily broadcasted.")
    implicit val ctx = drmA.context
    val AtA = (drmA.t %*% drmA).checkpoint()
    val inCoreAtA = AtA.collect
    val ch = chol(inCoreAtA)
    val inCoreR = (ch.getL cloned) t
    if (checkRankDeficiency && !ch.isPositiveDefinite)
        throw new IllegalArgumentException("R is rank-deficient.")
    val bcastAtA = sc.broadcast(inCoreAtA)
    val Q = A.mapBlock() {
        case (keys, block) => keys -> chol(bcastAtA).solveRight(block)
    Q -> inCoreR


The scala dqrThin(...) method can easily be called in any Spark or H2O application built with the math-scala library and the corresponding Spark or H2O engine module as follows:

import org.apache.mahout.math._
import decompositions._
import drm._

val(drmQ, inCoreR) = dqrThin(drma)